rs27533347 SNP Detail

Summary

• ID
  rs27533347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116483655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTACCCAA GGCAAAACTT
  GGTTAAAAAA AAAAAAAATG CTCAAGGGAC AGAAAAAAAT AGAATCCAGG ACCTAAAAAA
  GGCAAGGTAA ACTGGAAAAT CGAACCTGTA TGGAAAATAA CTTCTTTCCT CGAACTGATG
  AATGCTTCTG TGCATATGGG AGAGATCAAG TTAGATTAGC ACTTTAAAGC TCTCAAATCA
  R
  GCATTCCTCC TTTGGGGTCC TTTCGCTTAG CAAACTCATC TAGCAAGTAA ACACTAGACT
  GATAGCTACA TACAGCCTTT ACCGAAGACA CTACGCAAGT AAAGTGTCCC TTGAAGCAAC
  AAAATCCCCG TCCCACATAC CGAAAACCTA ACGAATCAAG ACACTTCTCC GCAAAGGTTA
  AGAGTTACAA AGCTTCAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694383	NES09221349	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27533347					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694383	NES09221349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116483655 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	385 bp upstream
Cpgi14636	CpG island 14636	254 bp proximal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	within coordinates
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	241 bp upstream
Rr398404	regulatory region 398404	936 bp upstream
Rr398405	regulatory region 398405	1405 bp upstream
Tssr42894	transcription start site region 42894	909 bp downstream
Tssr42895	transcription start site region 42895	1028 bp downstream
Tssr42896	transcription start site region 42896	1438 bp downstream
Tssr42897	transcription start site region 42897	1463 bp downstream
Tssr42898	transcription start site region 42898	1514 bp downstream