rs27538165 SNP Detail

Summary

• ID
  rs27538165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124567205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCCCTC CCCAGTCTCT
  ACGTGCCAGA TGGAGCCTGT GTTTTCCCAC CTACCTCTCT ACCTAAAGAG CCCTCTCTCA
  GGGAGAGACA TTAGTCCCGG CCCTACAGGA TCAAATTAGC TAAGGAAGAG AGCCGATTCC
  TCCCCACTCC GTCCCTCCTC ACCCTGAGCT GACAGTCCCG CGCGTCCTGC ACTCTACCAC
  M
  GGCCATGGGA ACCCATGCAA ACCCGGAGCT GGAGGAACAG AAGGTCTTCC CCTAACTTTT
  AGCAAAATGG CAGGTGCTGC CACCTCTAGA GGGGTGGTCC CTGCCACTGC TCAGCCCTCT
  CCTCTGAACT CTTCAGTTCT CTGAGCAAAA GAAGGCCAAA GATGGGGACT TGTTCAGTGC
  TTTCAAGGTG AAGCTTGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37739486	NES09185725	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27538165					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739486	NES09185725	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124567205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14773	CpG island 14773	968 bp distal