rs27538169 SNP Detail

Summary

• ID
  rs27538169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124565706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCCCCT TAACACCTGG
  GCAGTGCGTC CCTTCACCCA CAGCATCTCT GCCTCAGCTC TCACTCTCGT TATTATTAGA
  TGTGATTTAC AGCGGAAGCG CTGAGTCAGA CAAACCGAGA TTTCCCCTAG ACAGAGGCAG
  TGGGAGAGGA GAGTCCAGGG GAGGTGGGCA GGGTCCTCGG AGGGAGCCAG GAGCTGGGTA
  Y
  ACCAGACTCC AACTTGTAGA ATGAGCAGGG AGTTTATGTT GCTGTTTCTC CTACCTGCTC
  TAGGCCCAGG ATCCTCACTT GGGACTCTTG GACATTCAGA CCCCTTTTCT GACATCTCGC
  CTCACCTTTG AGCTTGTCTT GGTTGGCCTC CTTTCCTTTT ACAAATTTAA GAGGAGAGCC
  TGGAAATGAG TCAGGACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37739490	NES09185721	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27538169					SNP	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739490	NES09185721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124565706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14773	CpG island 14773	339 bp proximal