rs27538172 SNP Detail

Summary

• ID
  rs27538172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124565130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCACCTG CACAGGAGTC
  TCTCAAGTCC AGGCTGAAGG TCATGGCCAA CCTTTAGGCT TTATCCTACC CAGTCTGAAA
  TGGAGTCAAA TGGAGACCCA GGTAGGGCAC GTTCTCTGCC AGTTCTCTGC AATACAAAGT
  CCTATGTTTT CTTTAAAGCT AGCCCCTGAC TCAGCCCTTA CCACTGAAAT GTAAGGCCAA
  R
  CCACCCTGGT CCACTGTGTC TCTCTTACCA GGGGTGTCAG GTGAGGGAAG AGGGTTGTGC
  CTGGGGGAGG GGCTGGGGCT GAAGAGCTCC AGAAGGGGAG GGCTGGCCCT GCAGGATGAC
  AGAGAGATGA TTAAACCCAC AGAGAAGATT GATAAGGGTG CTAAAAAGCT GCAAGTCTGC
  AAGGTGGGCT GGGGACAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37739493	NES09185718	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27538172					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739493	NES09185718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124565130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14773	CpG island 14773	915 bp proximal