rs27538173 SNP Detail

Summary

• ID
  rs27538173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:124564989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCAGCC TGGACCACAA
  CACAGGCCCC ATTGACTCCT GTGTACCCTC TTTCCCAAGA TGCCCACAAA GTCATGGGCT
  CATGGTTCCT AGCCACAGGC TCCTGAGCCC CCCAAGAAGG CCAGGGTTGG CGAGAACATA
  AACTGCACCT GCACAGGAGT CTCTCAAGTC CAGGCTGAAG GTCATGGCCA ACCTTTAGGC
  Y
  TTATCCTACC CAGTCTGAAA TGGAGTCAAA TGGAGACCCA GGTAGGGCAC GTTCTCTGCC
  AGTTCTCTGC AATACAAAGT CCTATGTTTT CTTTAAAGCT AGCCCCTGAC TCAGCCCTTA
  CCACTGAAAT GTAAGGCCAA ACCACCCTGG TCCACTGTGT CTCTCTTACC AGGGGTGTCA
  GGTGAGGGAA GAGGGTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37739494	NES09185717	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27538173					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739494	NES09185717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124564989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14773	CpG island 14773	1056 bp proximal