rs27538710 SNP Detail

Summary

• ID
  rs27538710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131804765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCTTAG CGTCCCTCTT
  GGGCCCTACC TGAGAGGCTC CGTGGGAGAG GTGACATCCT GAAGGGACAG TTCACATTTC
  CTCACCGCTA GTATTTTCTA TCCATCTGCT CATTTTTTTT TATATCATTA AATTCTTCCA
  GTCAGAAATG CTTGACGCTC AGAGAGCTGA TGTGACAACC ACACAGTTCT GAAATAACTT
  Y
  GAGGGTGACA GGCAGGGCAC AGCTTTCTTC CTCTGGAGGC TGAAGGCTCA GTTTGCTGGG
  GCCTGTGGGC AACTGATAAA CTGGGGGGGG GGGGGGGGGA AGGGACTTGT TTGTGTCAGC
  CTCCCTCCCC TTCTGAGAAT GCCTGAGCCT CCTTATCCTG TCAGAGCCTG GGTGCTGTCC
  CCAGCTTCAA GTGGGCGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37747429	NES09171531	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C		C	C		C
ss321330386	CHEV_4_131633369	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27538710					SNP	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747429	NES09171531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131804765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	1890 bp distal
Gm10300	predicted gene 10300	462 bp downstream
Rr1070	regulatory region 1070	within coordinates
Rr600866	regulatory region 600866	1643 bp distal
Rr600867	regulatory region 600867	within coordinates
Rr600868	regulatory region 600868	1979 bp proximal
Tssr39361	transcription start site region 39361	1845 bp downstream
Tssr43636	transcription start site region 43636	1042 bp downstream