rs27538711 SNP Detail

Summary

• ID
  rs27538711
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131804447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGTGTG CCTATGTGTG
  AGTTTGTACT TGGGAATACA TCTGAGAAAG TGTTTGTGAA CTTCCGTGTG GGCTGTCAGC
  ATACTGGGAC TTGGGGGTTG GGCCGGGGGA GGGTGAGCGT GAGTTACCTA CGGAGGGTGA
  CTATTCGTGC CCTAGAATCA GAATGCCTGG CCCTGAGCTA TCTGCACCTA GGGAATTTTG
  W
  CCTGCCCCTG GAACCTCTGT GCTCAGGCAC CTGTGTGTTT CCCGTTGAAG CACTGGGTGA
  ACAACCAATG CAGTCTTGGA AAGCCTGTGG AGGGATATAG GTCACTGCCT CCGCCAGGAA
  TTCTTAGCGT CCCTCTTGGG CCCTACCTGA GAGGCTCCGT GGGAGAGGTG ACATCCTGAA
  GGGACAGTTC ACATTTCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37747430	NES09171530	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27538711					SNP	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747430	NES09171530	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131804447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	1572 bp distal
Epb41	erythrocyte membrane protein band 4.1	1815 bp upstream
Gm10300	predicted gene 10300	144 bp downstream
Rr1070	regulatory region 1070	within coordinates
Rr600865	regulatory region 600865	1855 bp distal
Rr600866	regulatory region 600866	1325 bp distal
Rr600867	regulatory region 600867	within coordinates
Tssr39361	transcription start site region 39361	1527 bp downstream
Tssr43633	transcription start site region 43633	1845 bp upstream
Tssr43634	transcription start site region 43634	1798 bp upstream
Tssr43635	transcription start site region 43635	1706 bp upstream
Tssr43636	transcription start site region 43636	1360 bp downstream