rs27538712 SNP Detail

Summary

• ID
  rs27538712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131804072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACAAATGC AATTATTCAA TCATGGATCC
  AGTATTATTT TTTTAATTGC TATCACATGT ATCCAGTCAT GCATGCCAGA GAGAGCAGAC
  TATGAATTCT TTAATTTGGC CTCAGTAAAC AAGGGCTCCC GGGCCAACTG CCTCCTTTCC
  Y
  GGGACTCAAT CTAAGGGCTG CCAATAGGAA AACCCCAGCC CCGGGTTGGA CAGAGTTATT
  CTAAAGGGCT GAAGAGGCCC CACCTCTCAG CTCTCCGGCA TGAGGCTCCA GCTCTGTTGG
  GTTTTTGCTG CTAGTGGGTG ACTCAGCAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
ss37747431	NES09171529	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		C	T		T		C		C
ss147472915	ENSMUSSNP2864584	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C					T
ss321330383	CHEV_4_131632676	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
rs27538712					SNP	C	C	C	C	C	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747431	NES09171529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131804072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	1197 bp distal
Epb41	erythrocyte membrane protein band 4.1	1440 bp upstream
Gm10300	predicted gene 10300	within coordinates
Rr1070	regulatory region 1070	within coordinates
Rr600865	regulatory region 600865	1480 bp distal
Rr600866	regulatory region 600866	950 bp distal
Rr600867	regulatory region 600867	51 bp proximal
Tssr39361	transcription start site region 39361	1152 bp downstream
Tssr43633	transcription start site region 43633	1470 bp upstream
Tssr43634	transcription start site region 43634	1423 bp upstream
Tssr43635	transcription start site region 43635	1331 bp upstream
Tssr43636	transcription start site region 43636	1735 bp downstream