rs27538715 SNP Detail

Summary

• ID
  rs27538715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131803871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCAGAA CTGGCTATAT
  GAACCCCGTA CAAAAACCTG GGACATACAC CCAGGCTCCC AAGCCAACCA AAACTCCTCT
  CTCCTACTAC CCAGGGCAGT GTTGTCTATT GGTCAAAGCT AGAAACTCGG ATGTAGCCTG
  CTTACATTAA TTCAGGTTTG AGCCTGTGGG TAAGCTTGTT TCCCTGGGGG TAAAATACGA
  Y
  GTTGCACCAA CATTACGTAG AATTGTTGTG CTGGTTAACT GAAATGGAAA CTACAAATGC
  AATTATTCAA TCATGGATCC AGTATTATTT TTTTAATTGC TATCACATGT ATCCAGTCAT
  GCATGCCAGA GAGAGCAGAC TATGAATTCT TTAATTTGGC CTCAGTAAAC AAGGGCTCCC
  GGGCCAACTG CCTCCTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37747434	NES09171526	PERLEGEN	MM_PANEL2	f	SNP	T	C	C		C
ss321330381	CHEV_4_131632475	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs27538715					SNP	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747434	NES09171526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131803871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	996 bp distal
Epb41	erythrocyte membrane protein band 4.1	1239 bp upstream
Gm10300	predicted gene 10300	within coordinates
Rr1070	regulatory region 1070	within coordinates
Rr600864	regulatory region 600864	1853 bp distal
Rr600865	regulatory region 600865	1279 bp distal
Rr600866	regulatory region 600866	749 bp distal
Rr600867	regulatory region 600867	252 bp proximal
Tssr39361	transcription start site region 39361	951 bp downstream
Tssr43633	transcription start site region 43633	1269 bp upstream
Tssr43634	transcription start site region 43634	1222 bp upstream
Tssr43635	transcription start site region 43635	1130 bp upstream
Tssr43636	transcription start site region 43636	1936 bp downstream