rs27538716 SNP Detail

Summary

• ID
  rs27538716
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131803493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gactcatcc taactaaact accccagaat
  ttcaaaagct cttcatgaga ttaaggccaa atctgccttg ggattcccac ctacagaGGA
  CAAACATAAT CCCCCTTTTA TTCATAGGAA TCAGAGAGTC AAATCCTAAA GCCATGGAGT
  W
  TTCACCATGC CAGGGAGCCC TGGAGAGTGA GActcttgtt tggacaaatg gagaaactga
  gggtcactga gggcaaataa cttcctgagT TTTGGTGACC TGCATTTTCA TCATGGAGCG
  GGAGAGTCAC TCAGGGGCAC AGAGAAGCCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37747435	NES09171525	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T		T
ss321330380	CHEV_4_131632097	CHEVERUD	SCREENING_POP	f	SNP					A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs27538716					SNP	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747435	NES09171525	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131803493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	618 bp distal
Epb41	erythrocyte membrane protein band 4.1	861 bp upstream
Gm10300	predicted gene 10300	within coordinates
Rr1070	regulatory region 1070	within coordinates
Rr600864	regulatory region 600864	1475 bp distal
Rr600865	regulatory region 600865	901 bp distal
Rr600866	regulatory region 600866	371 bp distal
Rr600867	regulatory region 600867	630 bp proximal
Tssr39361	transcription start site region 39361	573 bp downstream
Tssr43633	transcription start site region 43633	891 bp upstream
Tssr43634	transcription start site region 43634	844 bp upstream
Tssr43635	transcription start site region 43635	752 bp upstream