rs27538717 SNP Detail

Summary

• ID
  rs27538717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131802729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACTCTGAT GCGAGGCCCC GCCCTCCCCT CGGGAGGTCC
  TGTAATTGGT GCAGACAACT GCCAATCTTT GGGGCGGCGG GCAGGACCGG GCACAGTAGC
  M
  CGACTGTCGC AACCGGGAAG GGGCGGGGGC TGCAGGTGCG GCCAGGCCGG GACGCCCAGC
  CTAGAGCAGC TCCTGATAGA CCCAGAGCAA TCAGGGGAGG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss37747436	NES09171594	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs27538717					SNP	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747436	NES09171594	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131802729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	within coordinates
Epb41	erythrocyte membrane protein band 4.1	97 bp upstream
Gm10300	predicted gene 10300	within coordinates
Rr1070	regulatory region 1070	within coordinates
Rr600864	regulatory region 600864	711 bp distal
Rr600865	regulatory region 600865	137 bp distal
Rr600866	regulatory region 600866	within coordinates
Rr600867	regulatory region 600867	1394 bp proximal
Tssr39361	transcription start site region 39361	186 bp upstream
Tssr43633	transcription start site region 43633	127 bp upstream
Tssr43634	transcription start site region 43634	80 bp upstream
Tssr43635	transcription start site region 43635	within coordinates