rs27538718 SNP Detail

Summary

• ID
  rs27538718
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGTGGGG CCCCCGGGAA AGTGCAGCTT GAAGACCAAG
  ACAACTCTTG AGGAAACACA GAGGGCACAC AGAGAAATAT GTGAGAGAGG GAACCCAGAG
  R
  CGACAGAGTA GGAGCCTGAC TCGGAGCAGA TCCAGTAGAC CTGAGGCAGA GGAAGTCCCA
  GCCTGGACGC GAGTGCGTGC GTCCGGGCGG TGACTCAAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37747437	NES09171593	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27538718					SNP	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747437	NES09171593	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	within coordinates
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm10300	predicted gene 10300	89 bp upstream
Rr1070	regulatory region 1070	661 bp upstream
Rr600863	regulatory region 600863	1402 bp distal
Rr600864	regulatory region 600864	within coordinates
Rr600865	regulatory region 600865	100 bp proximal
Rr600866	regulatory region 600866	674 bp proximal
Tssr39361	transcription start site region 39361	996 bp upstream
Tssr43633	transcription start site region 43633	642 bp downstream
Tssr43634	transcription start site region 43634	691 bp downstream
Tssr43635	transcription start site region 43635	809 bp downstream