rs27538719 SNP Detail

Summary

• ID
  rs27538719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCGGAATA AGTCTCCGCC TCCAGCCTGC AAGACTGCAG
  AGGTCTGGTC CTCCCCCCAA AGAGGTGGGG CCCCCGGGAA AGTGCAGCTT GAAGACCAAG
  R
  CAACTCTTGA GGAAACACAG AGGGCACACA GAGAAATATG TGAGAGAGGG AACCCAGAGG
  CGACAGAGTA GGAGCCTGAC TCGGAGCAGA TCCAGTAGAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37747438	NES09171592	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27538719					SNP	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747438	NES09171592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801859 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14949	CpG island 14949			within coordinates
Epb41	erythrocyte membrane protein band 4.1			Intron
				Noncoding-Transcript-Variant
Gm10300	predicted gene 10300			149 bp upstream
Rr1070	regulatory region 1070			721 bp upstream
Rr600863	regulatory region 600863			1342 bp distal
Rr600864	regulatory region 600864			within coordinates
Rr600865	regulatory region 600865			160 bp proximal
Rr600866	regulatory region 600866			734 bp proximal
Tssr39361	transcription start site region 39361			1056 bp upstream
Tssr43633	transcription start site region 43633			702 bp downstream
Tssr43634	transcription start site region 43634			751 bp downstream
Tssr43635	transcription start site region 43635			869 bp downstream