rs27538720 SNP Detail

Summary

• ID
  rs27538720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCAGCAT AGACCCCCAT
  CCAGGCCCGT GATCCGGGTG AGGACTACAT GTGGACAAGC ACTTACTAGT GTGGGGGAGG
  AGAGGTACTG CGACAGTGCT CTGGCCTCTC CCCCGCCCCT TCAGTAGCTG AGGACCCGAC
  CCTGACTTGG CCCCAAGCAA CTATGCCTAG AACTCCAGCT TCCTTAAAGT CCACCCGGAA
  Y
  CAGCTATTCT CCTAGAGCCT GTACGTTTAG AAGGCGGCTC CCTGGGAATA GAAGGGGCTG
  CCTTCTCCCT GTTGCAGGAA TTTAAGGGGT CAGTTAAATG CAGCCATTGT CTTTCGGGGG
  AGCCAGAGGG CCCTGGAATA ACCACACAAC CCTTGAGGGA GAGTGGTGCT CCCCTGTCCT
  TTCAGGGCAG ATTCGGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37747439	NES09171591	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C		C		T
ss321330376	CHEV_4_131630157	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27538720					SNP	T	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747439	NES09171591	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	148 bp proximal
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm10300	predicted gene 10300	455 bp upstream
Rr1070	regulatory region 1070	1027 bp upstream
Rr600863	regulatory region 600863	1036 bp distal
Rr600864	regulatory region 600864	within coordinates
Rr600865	regulatory region 600865	466 bp proximal
Rr600866	regulatory region 600866	1040 bp proximal
Tssr39361	transcription start site region 39361	1362 bp upstream
Tssr43633	transcription start site region 43633	1008 bp downstream
Tssr43634	transcription start site region 43634	1057 bp downstream
Tssr43635	transcription start site region 43635	1175 bp downstream