rs27538721 SNP Detail

Summary

• ID
  rs27538721
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131801031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATTTGA TTCTGCTAAT
  TCCTATAAGG TCCAGGGCGG GCTGGGAGAG GTAAGGTGAG TCGGGTAAGG TCACACAGTA
  ACAGCTGGGC TGGGTGGGAC TCAAAGCTAG TTCTTCTGAG GGCAAAATCT GTGTGGTACT
  GATATTGCCC TCCTGCTCCG TTCCCTACAG CCTCTGGTTC CCTTTCTTCC CAGACCTTGC
  S
  TCTCTTTCTG CAGTCTCCCT CCCCCATTCC CACAGTTAAA AATTCCCACC CTACAACTGC
  GGTAACACCT TGCTTCTGTG CACCCAACAG CAGCAGATAC CACAGGCAGC CACTGAAAGT
  TATTTCTGAG GTGTCTGCCT TAGGAGGGCC TTGATGGCAA GGAGTCACCC CAGCAGCGCT
  CTCGCTCGCT CTCTCTCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37747440	NES09171603	PERLEGEN	MM_PANEL2	f	SNP	C	C	G		G	C		C
ss321330372	CHEV_4_131629635	CHEVERUD	SCREENING_POP	f	SNP				C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27538721					SNP	C	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747440	NES09171603	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131801031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	670 bp proximal
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Gm10300	predicted gene 10300	977 bp upstream
Rr1070	regulatory region 1070	1549 bp upstream
Rr600863	regulatory region 600863	514 bp distal
Rr600864	regulatory region 600864	487 bp proximal
Rr600865	regulatory region 600865	988 bp proximal
Rr600866	regulatory region 600866	1562 bp proximal
Tssr39361	transcription start site region 39361	1884 bp upstream
Tssr43633	transcription start site region 43633	1530 bp downstream
Tssr43634	transcription start site region 43634	1579 bp downstream
Tssr43635	transcription start site region 43635	1697 bp downstream