rs27539572 SNP Detail

Summary

• ID
  rs27539572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132185331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAAAGG TGGATAAAGG
  AGCTTGCTGC CAGGCCGGAC AACCTGAGTT CCACACTCAG GCCCCGGATG GTGAAAATAC
  AGAACTGCTG GAAGCTGGCC TCTGATCCCA TGTGCACAGA AGCACATGCA CACGTGAGAC
  CTAAAGAAAT AACTGTAATC TAAAACAGAA GGTAGATGAG CCAACAGTAA ATTTCACTAA
  R
  GCTGTTGGTA GGATCCTGGG TAAGACTCCT ATAAAAAAGA AAGTGGACTG AAAGTTTTCC
  TGGCAGAAAA AGAAAAAAAA AGAAAAAGAA AAAGAGAAGG AGAAGGAGAA AAAGTATCTG
  ACTTTTCAAA TCTAAGACTA TGAGCCTTTT GTCTTTCTTC TCTGTGTAGC CTTGGCTGTC
  TTGGAACTTG CACTGTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37746472	NES09161330	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A		A	G	G	G		G
ss37754239	NES09157784	PERLEGEN	MM_PANEL2	r	SNP	C	C	C	C	C	C	T	C	C	T		T	C	C	C		C
ss321333564	CHEV_4_132013935	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27539572					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37746472	NES09161330	PERLEGEN	MM_PANEL	f	SNP	A/G
ss37754239	NES09157784	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132185331 () rs orientation: forward

Symbol	Name	Function Class
Med18	mediator complex subunit 18	711 bp downstream
Rr377204	regulatory region 377204	within coordinates