rs27541590 SNP Detail

Summary

• ID
  rs27541590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132901835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAGCAGA GAAATGGAAT
  GGGAGTCATT TCCTAAGACA ATGAACGGAC AAGTATTTAG GAAACACCTC TGCATCCCAA
  AGATAGGCAC AGCTGCCTCA CAGCGACCGT TAGAGAGGTT CAAAGTTAGA AGCAAACAGC
  TGGTTCTTTT AGTTCCTATG TTGTTACTCT TGGTGACAGG AAATCTTGTT CCCCAGGCTG
  Y
  TGGCTTCCTG TTTTATTTTT ACTTGTAGCA GATCAGAATG TCCATAACAA GGAGCAGCCT
  GTTCCAAAAG GTTCCACTGC CTCTCTGTGT ATTTGTTAGT TTGGGGTTTT TGTTTCATTT
  TGGTGCAACA ATGTGTTGGT TTGCCTTTAA TCTCTGTAGT GATGAGCTTG TAGTAAGCGT
  TTTGGATTTG CAGGCAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37756610	NES09156286	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27541590					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756610	NES09156286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132901835 () rs orientation: forward

Symbol	Name	Function Class
Gm69072	predicted gene, 69072	within coordinates
Rr367728	regulatory region 367728	within coordinates
Rr601217	regulatory region 601217	within coordinates
Rr601218	regulatory region 601218	1636 bp proximal
Tssr1326	transcription start site region 1326	1831 bp downstream
Tssr39456	transcription start site region 39456	49 bp downstream
Tssr39457	transcription start site region 39457	1 bp upstream
Tssr39458	transcription start site region 39458	15 bp upstream
Tssr39459	transcription start site region 39459	1490 bp upstream
Tssr39460	transcription start site region 39460	1812 bp upstream
Wasf2	WASP family, member 2	within coordinates