rs27541593 SNP Detail

Summary

• ID
  rs27541593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132900476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG AAGCTTTGCC TATGACCTGT
  R
  GAACTACAAA TACCTATCCC TTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37756613	NES09156328	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		G	G	G	G	G	G	A	G	A
ss45619250	mCV24818603	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss45666012	mCV24818613	ABI	CRAMUS_MOUSE	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27541593					SNP	G	G	A	A	G	G	A	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756613	NES09156328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132900476 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	1451 bp upstream
Gm69072	predicted gene, 69072	within coordinates
Rr367728	regulatory region 367728	1141 bp upstream
Rr601217	regulatory region 601217	1004 bp proximal
Tssr1326	transcription start site region 1326	472 bp downstream
Tssr39456	transcription start site region 39456	1306 bp upstream
Tssr39457	transcription start site region 39457	1360 bp upstream
Tssr39458	transcription start site region 39458	1374 bp upstream
Wasf2	WASP family, member 2	within coordinates