rs27541594 SNP Detail

Summary

• ID
  rs27541594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132900266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA CAGTTGGGAG ACTGGAGGAG
  R
  GAGGATTGTA TTTCAGGAGG TCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756614	NES09156326	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A		A	G		G
ss321339081	CHEV_4_132728870	CHEVERUD	SCREENING_POP	f	SNP					G			A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27541594					SNP	G	A	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756614	NES09156326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132900266 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	1241 bp upstream
Gm69072	predicted gene, 69072	within coordinates
Rr367728	regulatory region 367728	1351 bp upstream
Rr601217	regulatory region 601217	1214 bp proximal
Tssr1326	transcription start site region 1326	262 bp downstream
Tssr39456	transcription start site region 39456	1516 bp upstream
Tssr39457	transcription start site region 39457	1570 bp upstream
Tssr39458	transcription start site region 39458	1584 bp upstream
Wasf2	WASP family, member 2	within coordinates