rs27541596 SNP Detail

Summary

• ID
  rs27541596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132899810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATTTCC TCCCTCAACA
  TGCCTGACAG TTGCTCATGC ACAGGCTGGA AAGACTTCAC AGTTTTATCC AAAGAGAACC
  CATTCTGCTA TAGAGCTGCG CTAGTTATAA AGAACTAGAT AAATTGAAAT TTACTTCTCT
  GTAACTTTTA TGTTTTTGAC AGTTCTAACT CATTTTCTAT TTAACACTCT CAAGATAAGA
  Y
  CTCAAATCCT GAGATTAGCA GCCATTGTGA TATTATGTAA TTTTCCTAAT CAAAAGTAAT
  ATATGACTAA AGGGCTGGAG AGAGGGCTCA GCGGGTAAGA GCTCTTGCTA TGCTGCGTCA
  GGACCAGGGC TCAGATCTCC AGCACCCTTG TAAACCAGCC AAGGCTTGGC CACACATGCA
  TGTAGCCCCA TCAGTTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37756616	NES09156350	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27541596					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756616	NES09156350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132899810 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	785 bp upstream
Gm69072	predicted gene, 69072	within coordinates
Rr367728	regulatory region 367728	1807 bp upstream
Rr601216	regulatory region 601216	1618 bp distal
Rr601217	regulatory region 601217	1670 bp proximal
Tssr1326	transcription start site region 1326	190 bp upstream
Tssr39456	transcription start site region 39456	1972 bp upstream
Wasf2	WASP family, member 2	within coordinates