rs27541597 SNP Detail

Summary

• ID
  rs27541597
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132899773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA ACTTTTATGT TTTTGACAGT
  W
  CTAACTCATT TTCTATTTAA CACTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756617	NES09156349	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		T	A	A	T		T	A	A	A		A
ss45621865	mCV24818614	ABI	CRAMUS_MOUSE	f	SNP	A	A					T		A
ss147484331	ENSMUSSNP6432143	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A							A
ss321339078	CHEV_4_132728377	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27541597					SNP	A	A	A	A	A	A	T	T	A	A	T	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756617	NES09156349	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132899773 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	748 bp upstream
Gm69072	predicted gene, 69072	within coordinates
Rr367728	regulatory region 367728	1844 bp upstream
Rr601216	regulatory region 601216	1581 bp distal
Rr601217	regulatory region 601217	1707 bp proximal
Tssr1326	transcription start site region 1326	227 bp upstream
Wasf2	WASP family, member 2	within coordinates