rs27541598 SNP Detail

Summary

• ID
  rs27541598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132899058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT TGATTGAGAA GGTGCTGTGA
  R
  GATGCAGTTG GACCCCTCAC CTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37756618	NES09156368	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	G	A	A	A	A
ss147484305	ENSMUSSNP5672581	ENSEMBL	ENSEMBL_Sanger	f	SNP	A						A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27541598					SNP	A	A	A	A	A	G	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756618	NES09156368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132899058 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	33 bp upstream
Gm69072	predicted gene, 69072	within coordinates
Rr367727	regulatory region 367727	1978 bp downstream
Rr601216	regulatory region 601216	866 bp distal
Tssr1326	transcription start site region 1326	942 bp upstream
Wasf2	WASP family, member 2	within coordinates