rs27541599 SNP Detail

Summary

• ID
  rs27541599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132898866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCCTG ATAGTGGTGA
  TGGTGGTGTC TGCGGTGGGT GTAGGTGCTG GTGCTGGTAC TGTAGACCAA ACCTAGGGCC
  TCAGATACAT GCTAGGCAAG TGCGTTAACA CTTTATGGCT GAACTATATC CCTAGCATCT
  ACATCTTTGA GAGATTCTTT GGGGCCTTTA GCAGAAGAGA GCAGCCAAGA TAGTCCTGGT
  R
  CTTAATCTGT GGTGTAGGAG GGAGCATACA GCTTTGGGAG GGACAGGCAT GAAGCTGAAG
  GAGTAAGGAG GACACCTGCC TAGCCAACTT CATCAGCCAA ATCACCCTGG CATCAGTGAG
  AAGACAGACA GATGTTGCAG CCTGACTGCC CTCACATGCT GCATCCCTGA TTGATTGAGA
  AGGTGCTGTG AGGATGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37756619	NES09156379	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27541599					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756619	NES09156379	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132898866 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	within coordinates
Gm69072	predicted gene, 69072	within coordinates
Rr367727	regulatory region 367727	1786 bp downstream
Rr601216	regulatory region 601216	674 bp distal
Tssr1326	transcription start site region 1326	1134 bp upstream
Tssr43741	transcription start site region 43741	1912 bp upstream
Wasf2	WASP family, member 2	within coordinates