rs27541603 SNP Detail

Summary

• ID
  rs27541603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132898016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC ATGCTAAACT CTACTGTGCA
  Y
  ACTTGAAGAA TTTCATCATT TGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37756623	NES09156412	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	C		C	T	T	T		T
ss45711220	mCV24818650	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C
ss147484261	ENSMUSSNP1571145	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321339068	CHEV_4_132726620	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27541603					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37756623	NES09156412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132898016 () rs orientation: forward

Symbol	Name	Function Class
Gm55379	predicted gene, 55379	722 bp downstream
Gm69072	predicted gene, 69072	within coordinates
Rr367727	regulatory region 367727	936 bp downstream
Rr601216	regulatory region 601216	within coordinates
Tssr1326	transcription start site region 1326	1984 bp upstream
Tssr43741	transcription start site region 43741	1062 bp upstream
Wasf2	WASP family, member 2	within coordinates