rs27542571 SNP Detail

Summary

• ID
  rs27542571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132235346 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   tgagttccag gacagccagg gctacacaga
  gaaaccctgt ctcgaaaaac aaaaACAAGA AAAAGAAAGT CACTTTGCAG TTTCGGGGAA
  AGCTGATAAT GTTTGCAACA TTTTTTTCTA CATCTTCTAC TCCTCAAGAA AAGATGTCTG
  Y
  TTTAAGTGGG ATCCTGAGAA GATGGGGTAC CGATCATCCA GACTCTAGTG CTCAAAACTC
  GAGGGCCAGA TGGATAGTCC CCGCAATTGT TTCAGACTTT ATTTCAGAGG GTCAAGGACT
  TCAGCTCTGT CTGTGTCCAG AAAGTTCCA                                  
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754390	NES09159298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		T	T	T	T		T
ss37758858	NES09152725	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	A	A	A	A	G		A	A	A	A		A
ss321333897	CHEV_4_132063950	CHEVERUD	SCREENING_POP	r	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542571					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754390	NES09159298	PERLEGEN	MM_PANEL	f	SNP	C/T
ss37758858	NES09152725	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132235346 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	1417 bp proximal
Gm12981	predicted gene 12981	within coordinates
Rr377205	regulatory region 377205	32 bp downstream
Rr377206	regulatory region 377206	835 bp upstream
Rr600989	regulatory region 600989	350 bp distal
Rr600990	regulatory region 600990	1169 bp proximal
Rr600991	regulatory region 600991	1604 bp proximal
Sesn2	sestrin 2	within coordinates