rs27542574 SNP Detail

Summary

• ID
  rs27542574
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132236397 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATGTCGTGTA TGGAGCACCT
  ACTAGATGCC AGGATATAGG TTTTGTCTGA CAAAGACAGC AAATACAAAA CGTATTTTAA
  CCCCATTTTA CAGAATGAGA AAATTGAGGC CCGAAAGGGA CAGAGAGAGG CCTAGCCCTC
  ATTCTCTGGA CTGTGTGTGA CTAGGATTTT GGAGAATGCT TGGCACTGCA GAAGATACTG
  W
  TCCTTTTTGA TTTTCTAAGC CTAGAGCAGT GTGGAAGGTC TATTGCCGGG GCTGGAAATA
  GGTACAGTGG TAGTCCCAAG GTGTATGATC TTAAAACCAG CCCATGTCTG AGGAAATGTC
  TTGGGGGGGG GGGGTCGTTG GAGGCAGCCA TCAGTCTGTT GCTTCTTCAT ATGGTTTAGG
  AATCTGTATG CAGAAAGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754393	NES09159438	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A		A	A	A		A
ss321333900	CHEV_4_132065001	CHEVERUD	SCREENING_POP	r	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542574					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754393	NES09159438	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132236397 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	366 bp proximal
Gm12981	predicted gene 12981	within coordinates
Rr377205	regulatory region 377205	1083 bp downstream
Rr377206	regulatory region 377206	within coordinates
Sesn2	sestrin 2	within coordinates
Tssr43678	transcription start site region 43678	1370 bp downstream
Tssr43679	transcription start site region 43679	1398 bp downstream
Tssr43680	transcription start site region 43680	1407 bp downstream