rs27542576 SNP Detail

Summary

• ID
  rs27542576
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132237079 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCTGAGAGCA CGTAAGCTAG
  GGCTAGGGTT GCATCAACTG CAGCCTCCGC TCTCCCTTCC CCTCCCCACT GCCCTCTCTC
  TCTTTACCCT CCCCACTACC ACCCTGGGAG GGAGGGGGAT GCGGAGCCCT CCCTGGCTCC
  TTCGGACTCC TGGCCAATGA GAGGGGACGC CTTCTCGTGG CTCTTTGGGT TTGTTCTCTG
  S
  TAAAGCGAGC GTCTTCAAGT CCAGGCAAAT CCCGGCCGGA GAGACCCGAC CACTCCTCCT
  CCCCGCCCCC TTCCGCAGAA TCCCTTCCTC TCGGTGGGGG CAGGCGGGCT GGGAGCTCTT
  TCTAGGATCG GTTTCTGGTC CTGTCGCTCA GCGAAGGGAG TAAACCACCT GGGACTGACC
  AGGGAAGGTC GATTCCCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754396	NES09159435	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G		G	C	C	C		C
ss37758850	NES09152642	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	C	G	G	C		C	G	G	G		G
ss321333905	CHEV_4_132065683	CHEVERUD	SCREENING_POP	r	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542576					SNP	C	C	C	C	C	C	G	C	C	G	G	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754396	NES09159435	PERLEGEN	MM_PANEL	f	SNP	C/G
ss37758850	NES09152642	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132237079 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	within coordinates
Gm12981	predicted gene 12981	119 bp upstream
Rr377205	regulatory region 377205	1765 bp downstream
Rr377206	regulatory region 377206	within coordinates
Rr600990	regulatory region 600990	130 bp distal
Rr600991	regulatory region 600991	within coordinates
Rr600992	regulatory region 600992	723 bp proximal
Sesn2	sestrin 2	within coordinates
Tssr43678	transcription start site region 43678	688 bp downstream
Tssr43679	transcription start site region 43679	716 bp downstream
Tssr43680	transcription start site region 43680	725 bp downstream