rs27542579 SNP Detail

Summary

• ID
  rs27542579
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132237793 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   CAGGCGCTTG TCGATGCTGA TTGGACGGAA
  GGTTGGCTCC GGAGGGAGGT GTCGGCTCCG CCTCCCCGAG AAACAGGCAT CTGATTGGCT
  GCGCCGTGGG ACTTTTGTGT CCCCGCCCTC CCCCAGGGAC CGCAGCGGGC TGACAGAGCC
  S
  GGCGAGCGCT GGCAGTTCCG TGGTGGGGAT GGTGAGGAGC GCCGGCTTCC CGAGCAGCGC
  TGGCCACTGC GGACTTCCGA GGCACTCCGG GCCGTGAAAA CCTCTGCGCC GCGGCCAATC
  TCAGGCCTCC GAGGCCGGCC GCAGTTTTC                                  
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754399	NES09159432	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C		C	G	G	G		G
ss37758847	NES09152645	PERLEGEN	MM_PANEL2	r	SNP	C	C	C	C	C	C	C	C	C	G		G	C	C	C		C
ss321333909	CHEV_4_132066397	CHEVERUD	SCREENING_POP	r	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542579					SNP	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754399	NES09159432	PERLEGEN	MM_PANEL	f	SNP	C/G
ss37758847	NES09152645	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132237793 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	within coordinates
Gm12981	predicted gene 12981	833 bp upstream
Rr377206	regulatory region 377206	within coordinates
Sesn2	sestrin 2	26 bp upstream
Tssr43678	transcription start site region 43678	5 bp upstream
Tssr43679	transcription start site region 43679	2 bp downstream
Tssr43680	transcription start site region 43680	11 bp downstream