rs27542583 SNP Detail

Summary

• ID
  rs27542583
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132238216 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   TTAAATTTGA GATTGTCAAG GGTATTTCAG
  TGAGGGCTTT TCCAGAGACT CCACAAATAA GGTGATTTCC TTGGTTTAGT GTTTCTGAAG
  GTGCAGATCC CTCAGGGCCT GAGGGGACAG GGTGGTGGCT CTTGGCTTCA AATTTGTGGG
  K
  TTTGATCTAT AATTAGAAGA ACTGGATGTG TGTGGTTAGA ACTCTCTGCA GACCTAACCA
  GTCCCTCCAG GAACTGGAAA GCTGAAGAAC TTACTCAGAA GGGATTTCAC ACCTGGCTGT
  CTGGCCCAGC CCCGTGAAGT CCCGTTTCA                                  
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754403	NES09159428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G		G	T	T	T		T
ss37758842	NES09152651	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	A	A	A	A	C		C	A	A	A		A
ss321333912	CHEV_4_132066820	CHEVERUD	SCREENING_POP	r	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542583					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754403	NES09159428	PERLEGEN	MM_PANEL	f	SNP	G/T
ss37758842	NES09152651	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132238216 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	130 bp distal
Gm12981	predicted gene 12981	1256 bp upstream
Rr377206	regulatory region 377206	within coordinates
Sesn2	sestrin 2	449 bp upstream
Tssr43678	transcription start site region 43678	428 bp upstream
Tssr43679	transcription start site region 43679	414 bp upstream
Tssr43680	transcription start site region 43680	396 bp upstream