rs27542584 SNP Detail

Summary

• ID
  rs27542584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132238301 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   CCATGAGTGC CTGGAGGGTG GAAGGCGGTG
  TGAAGGCACC CAAGGCAGGA CAGAAGAGGG GAAATTGTAG CAATGAGGAT TGAGATTAAA
  TTTGAGATTG TCAAGGGTAT TTCAGTGAGG GCTTTTCCAG AGACTCCACA AATAAGGTGA
  Y
  TTCCTTGGTT TAGTGTTTCT GAAGGTGCAG ATCCCTCAGG GCCTGAGGGG ACAGGGTGGT
  GGCTCTTGGC TTCAAATTTG TGGGTTTTGA TCTATAATTA GAAGAACTGG ATGTGTGTGG
  TTAGAACTCT CTGCAGACCT AACCAGTCC                                  
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754404	NES09159427	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		C	T	T	T		T
ss37758841	NES09152653	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	A	A	A	A	G		G	A	A	A		A
ss321333914	CHEV_4_132066905	CHEVERUD	SCREENING_POP	r	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542584					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754404	NES09159427	PERLEGEN	MM_PANEL	f	SNP	C/T
ss37758841	NES09152653	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132238301 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	215 bp distal
Gm12981	predicted gene 12981	1341 bp upstream
Gm68741	predicted gene, 68741	1971 bp downstream
Rr377206	regulatory region 377206	within coordinates
Rr600990	regulatory region 600990	1352 bp distal
Rr600991	regulatory region 600991	851 bp distal
Rr600992	regulatory region 600992	within coordinates
Rr600993	regulatory region 600993	1140 bp proximal
Sesn2	sestrin 2	534 bp upstream
Tssr43678	transcription start site region 43678	513 bp upstream
Tssr43679	transcription start site region 43679	499 bp upstream
Tssr43680	transcription start site region 43680	481 bp upstream