rs27542588 SNP Detail

Summary

• ID
  rs27542588
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132239086 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                   gaactcagaa atccacctgc ctctgcctcc
  caagtgctgg gactaaaggc gtgtgccacc atgcccggct GAGTCTATGT TTTTAAGGAG
  AAAGCTGAAT CTGATATAGA GTTGTTTAGA AAAGAATTAA CCCAAAGGGA TATTCAGTGG
  S
  CAAGGGTATA TTATTAGAAG CACGTTGTGC CAGGTGGCAT AAGGTAGAAA GAAAAAAAAA
  AAGTCTAAAT GTAGACACTG CCCTCAACAA GTTTATAATA AAAACTTTCA GATAAGACAA
  ATACACAGAA TATGACAACA CAAGTTACA                                  
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754408	NES09159419	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G		G	C	C	C		C
ss37758837	NES09152657	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	G	G	G	C		C	G	G	G		G
ss321333917	CHEV_4_132067690	CHEVERUD	SCREENING_POP	r	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542588					SNP	C	C	C	C	C	C	C	C	C	G	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754408	NES09159419	PERLEGEN	MM_PANEL	f	SNP	C/G
ss37758837	NES09152657	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132239086 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	1000 bp distal
Gm68741	predicted gene, 68741	1186 bp downstream
Rr377206	regulatory region 377206	706 bp downstream
Rr377207	regulatory region 377207	1294 bp upstream
Sesn2	sestrin 2	1319 bp upstream
Tssr43678	transcription start site region 43678	1298 bp upstream
Tssr43679	transcription start site region 43679	1284 bp upstream
Tssr43680	transcription start site region 43680	1266 bp upstream