rs27542589 SNP Detail

Summary

• ID
  rs27542589
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132239426 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TACTG ACATTATTGT TATTTCTGTT
  M
  GTGTGTCTGT GTGGTATTGG GAATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37754409	NES09159450	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A		A	C	C	C		C
ss37758836	NES09152579	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	G	G	G	T	G	G	T		T	G	G	G		G
ss321333919	CHEV_4_132068030	CHEVERUD	SCREENING_POP	r	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27542589					SNP	C	C	C	C	C	C	A	C	C	A	A	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754409	NES09159450	PERLEGEN	MM_PANEL	f	SNP	A/C
ss37758836	NES09152579	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132239426 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	1340 bp distal
Gm68741	predicted gene, 68741	846 bp downstream
Rr377206	regulatory region 377206	1046 bp downstream
Rr377207	regulatory region 377207	954 bp upstream
Sesn2	sestrin 2	1659 bp upstream
Tssr43678	transcription start site region 43678	1638 bp upstream
Tssr43679	transcription start site region 43679	1624 bp upstream
Tssr43680	transcription start site region 43680	1606 bp upstream