rs27543359 SNP Detail

Summary

• ID
  rs27543359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134655789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA CCCAGCATCA GTAACAGTAT
  Y
  TTAGCCCTTC TGGAGGCAGC CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37759579	NES09162092	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C		C	T	T	C		C	T	T		T
ss45719016	mCV24216195	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		T
ss147538905	ENSMUSSNP6434678	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321350012	CHEV_4_134484393	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27543359					SNP	T	T	C	C	T	C	T	C	T	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759579	NES09162092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134655789 () rs orientation: forward

Symbol	Name	Function Class
Rr367744	regulatory region 367744	1556 bp upstream
Rsrp1	arginine/serine rich protein 1	1108 bp downstream
Tssr39593	transcription start site region 39593	1875 bp downstream
Tssr39594	transcription start site region 39594	1788 bp downstream
Tssr39595	transcription start site region 39595	1748 bp downstream
Tssr43947	transcription start site region 43947	1107 bp upstream