rs27543360 SNP Detail

Summary

• ID
  rs27543360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134655749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATGAGA AAGTATTAAG
  TCTCAGTCCT CAAATGTGTT AAATTGACAG GAAAGCCAGC CTGTGTATTT GCATTTCCCA
  ACAAATGAGC CACTGTCTAT TTAAACACTA AATTCCCTGT CATCACAATT TGTAGTGTGA
  CTAGCAGCTG CCTCTTAAGT ACAAATAGTA GGCTGGGGAT GTAGCTCAAT TGGTTAGAAT
  R
  CTTCCTGAGT TTCTGTGAAC CCAGCATCAG TAACAGTATT TTAGCCCTTC TGGAGGCAGC
  CCAGGGGCCA CATACACAAA GGCAAATTTG CTTTTCTTTT TTTCTTTTTG GGTTTTACTG
  TGCTTTGAGT AAGGATATAC ATAGCCATGG CTGTCCTGGA ACTCATTGTA GATCAGGCTG
  GTCCTGAACT GGCCTTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37759580	NES09162091	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		G	G	A		G	G		G
ss45621846	mCV24216199	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				G	G
ss147538901	ENSMUSSNP5306023	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss321350010	CHEV_4_134484353	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27543360					SNP	G	G	A	A	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759580	NES09162091	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134655749 () rs orientation: forward

Symbol	Name	Function Class
Rr367744	regulatory region 367744	1596 bp upstream
Rr601870	regulatory region 601870	within coordinates
Rr601871	regulatory region 601871	779 bp proximal
Rr601872	regulatory region 601872	1970 bp proximal
Rsrp1	arginine/serine rich protein 1	1068 bp downstream
Tssr39593	transcription start site region 39593	1835 bp downstream
Tssr39594	transcription start site region 39594	1748 bp downstream
Tssr39595	transcription start site region 39595	1708 bp downstream
Tssr43947	transcription start site region 43947	1067 bp upstream