rs27543361 SNP Detail

Summary

• ID
  rs27543361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134655564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGTGGTT AGGTCGTGAA
  CACCAGGTGA GAACTCAACC TCCACCTCCC TGTTAGAGTT ACAACCTACT AGTGGGTGCC
  TCAGGCAGGA GGATTTCACC CTGTAAGCTG AGCTTTGTCC AGCGTCTACT GAGAATAACA
  ATATTCCCTA CTGGGCAGAA AGTTTCCTGA GCTTTGCCAG GAAATGGGGA TGAGAAAGTA
  Y
  TAAGTCTCAG TCCTCAAATG TGTTAAATTG ACAGGAAAGC CAGCCTGTGT ATTTGCATTT
  CCCAACAAAT GAGCCACTGT CTATTTAAAC ACTAAATTCC CTGTCATCAC AATTTGTAGT
  GTGACTAGCA GCTGCCTCTT AAGTACAAAT AGTAGGCTGG GGATGTAGCT CAATTGGTTA
  GAATGCTTCC TGAGTTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37759581	NES09162090	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27543361					SNP	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759581	NES09162090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134655564 () rs orientation: forward

Symbol	Name	Function Class
Rr367744	regulatory region 367744	1781 bp upstream
Rr601869	regulatory region 601869	1971 bp distal
Rr601870	regulatory region 601870	within coordinates
Rr601871	regulatory region 601871	964 bp proximal
Rsrp1	arginine/serine rich protein 1	883 bp downstream
Tssr39593	transcription start site region 39593	1650 bp downstream
Tssr39594	transcription start site region 39594	1563 bp downstream
Tssr39595	transcription start site region 39595	1523 bp downstream
Tssr43947	transcription start site region 43947	882 bp upstream