rs27543362 SNP Detail

Summary

• ID
  rs27543362
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134655383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC CAGGCGTGGT TAGGTCGTGA
  M
  CACCAGGTGA GAACTCAACC TCCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37759582	NES09162089	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	C		C	A	A	C		C	A	A		A
ss45575301	mCV24216205	ABI	CRAMUS_MOUSE	f	SNP	A	A	C				A		A
ss147538886	ENSMUSSNP5319578	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss321350007	CHEV_4_134483987	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27543362					SNP	A	A	C	A	A	C	A	C	A	A	C	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759582	NES09162089	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134655383 () rs orientation: forward

Symbol	Name	Function Class
Rr367744	regulatory region 367744	1962 bp upstream
Rr601869	regulatory region 601869	1790 bp distal
Rr601870	regulatory region 601870	157 bp proximal
Rr601871	regulatory region 601871	1145 bp proximal
Rsrp1	arginine/serine rich protein 1	702 bp downstream
Tssr39592	transcription start site region 39592	1999 bp downstream
Tssr39593	transcription start site region 39593	1469 bp downstream
Tssr39594	transcription start site region 39594	1382 bp downstream
Tssr39595	transcription start site region 39595	1342 bp downstream
Tssr43947	transcription start site region 43947	701 bp upstream