rs27543363 SNP Detail

Summary

• ID
  rs27543363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134655222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG TTTGGGAATT TGCCAATAAG
  Y
  GATCCTTTAA AAAGAATATG AATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37759583	NES09162088	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	T		C	C	C	C		C	C	C		C
ss45667934	mCV24216207	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				C		C
ss147538875	ENSMUSSNP3038667	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss321350005	CHEV_4_134483826	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27543363					SNP	C	C	T	T	C	T	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759583	NES09162088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134655222 () rs orientation: forward

Symbol	Name	Function Class
Rr601869	regulatory region 601869	1629 bp distal
Rr601870	regulatory region 601870	318 bp proximal
Rr601871	regulatory region 601871	1306 bp proximal
Rsrp1	arginine/serine rich protein 1	541 bp downstream
Tssr39592	transcription start site region 39592	1838 bp downstream
Tssr39593	transcription start site region 39593	1308 bp downstream
Tssr39594	transcription start site region 39594	1221 bp downstream
Tssr39595	transcription start site region 39595	1181 bp downstream
Tssr43947	transcription start site region 43947	540 bp upstream