rs27543364 SNP Detail

Summary

• ID
  rs27543364
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134654783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTATAGA ATTGCTTATA
  TACAAAGGTG AATTTTTTAA AGACACAGTT GTACACTGAA TTTTGTATAT TTGTTAATAA
  ACTTTTTATT ATTTGTCTTG ATTTTTATGG ATGTTGAATG TGTCTGTCTA CATCTGAAGA
  AGAAACCTTC CTGAAAACAA CACAGGGTTT ATGAATTCAT ACTTTGACAT TTGTGTGTTG
  S
  ATTAGGGAGG TTGGACATTG GTTTCTTTTT TCTTTAAATG TGTATCCCCT CAGGGCTGGT
  ATTGGAATAT GCCCTAAGAC TCCTCTTAAT CATCTGTAAC TCCAATTCTA GGGGACCCAG
  CGTTCTGTTC CATGGGATGT GTGACTCACA TGTGGGCAAA CTTGATACAC ATAAATAAAA
  GACTGACCTT TAAAAGACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37759584	NES09162159	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	G	G		C	C	C
ss147538868	ENSMUSSNP446099	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27543364					SNP	C	C	C	C	C	C	C	C	C	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759584	NES09162159	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134654783 () rs orientation: forward

Symbol	Name	Function Class
Rsrp1	arginine/serine rich protein 1	102 bp downstream
Tssr39592	transcription start site region 39592	1399 bp downstream
Tssr39593	transcription start site region 39593	869 bp downstream
Tssr39594	transcription start site region 39594	782 bp downstream
Tssr39595	transcription start site region 39595	742 bp downstream
Tssr43947	transcription start site region 43947	101 bp upstream