rs27543365 SNP Detail

Summary

• ID
  rs27543365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134654564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGAAGATAGG AGGACACAGA TGACCCAGAG AATTGCATAC AGGTGGGAAT
  Y
  TTGTATATAT CTGTAAGTAT TGTATAGAAT TGCTTATATA CAAAGGTGAA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37759585	NES09162157	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	T		C	C	C
ss147538866	ENSMUSSNP5350705	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27543365					SNP	C	C	C	C	C	C	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759585	NES09162157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134654564 () rs orientation: forward

Symbol	Name	Function Class
Rr601869	regulatory region 601869	971 bp distal
Rr601870	regulatory region 601870	976 bp proximal
Rr601871	regulatory region 601871	1964 bp proximal
Rsrp1	arginine/serine rich protein 1	within coordinates
Tssr39591	transcription start site region 39591	1786 bp downstream
Tssr39592	transcription start site region 39592	1180 bp downstream
Tssr39593	transcription start site region 39593	650 bp downstream
Tssr39594	transcription start site region 39594	563 bp downstream
Tssr39595	transcription start site region 39595	523 bp downstream
Tssr43947	transcription start site region 43947	115 bp downstream