rs27543367 SNP Detail

Summary

• ID
  rs27543367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134652777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAAGTCTC CGAGCCAAGG AGGCAAGCCA GGGGACAGCT
  GTTTCCAGCA GTGGGCCAAA GGTGGAGGTA AGTGCCTTCA GGAAGCTGCT GCCAGCATTT
  R
  TTACCCTTTG CCAGTGAACA CAACCCTCCT GGGGTTCTTT ATATCATTTG TCCAGAACAA
  AACCTTAATC TGACAAGTAT CAGCCTGTCT CACAGGAAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37759588	NES09162239	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27543367					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759588	NES09162239	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134652777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15053	CpG island 15053	802 bp distal
Rr398583	regulatory region 398583	1824 bp downstream
Rsrp1	arginine/serine rich protein 1	within coordinates
Tssr39581	transcription start site region 39581	1873 bp downstream
Tssr39582	transcription start site region 39582	1838 bp downstream
Tssr39583	transcription start site region 39583	1467 bp downstream
Tssr39584	transcription start site region 39584	1401 bp downstream
Tssr39585	transcription start site region 39585	1367 bp downstream
Tssr39586	transcription start site region 39586	1245 bp downstream
Tssr39587	transcription start site region 39587	1177 bp downstream
Tssr39588	transcription start site region 39588	1091 bp downstream
Tssr39589	transcription start site region 39589	1066 bp downstream
Tssr39590	transcription start site region 39590	1039 bp downstream
Tssr39591	transcription start site region 39591	within coordinates
Tssr39592	transcription start site region 39592	602 bp upstream
Tssr39593	transcription start site region 39593	1124 bp upstream
Tssr39594	transcription start site region 39594	1209 bp upstream
Tssr39595	transcription start site region 39595	1236 bp upstream
Tssr43947	transcription start site region 43947	1902 bp downstream