rs27543406 SNP Detail

Summary

• ID
  rs27543406
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134647081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT AAAGATTGTG CAGTGTTCCT
  S
  AACTCTTGGG TCTGTCGCAT CCTTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37759627	NES09162400	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C		C	G	G	C		C	G	G		G
ss45719351	mCV22753413	ABI	CRAMUS_MOUSE	f	SNP		C				G		G
ss147538695	ENSMUSSNP833674	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						G
ss321349957	CHEV_4_134475685	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27543406					SNP	G	C	C	G	C	G	C	G	G	C	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759627	NES09162400	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134647081 () rs orientation: forward

Symbol	Name	Function Class
Rr367743	regulatory region 367743	1100 bp downstream
Rr398582	regulatory region 398582	388 bp upstream
Tssr43946	transcription start site region 43946	1355 bp upstream