rs27543407 SNP Detail

Summary

• ID
  rs27543407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134645730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTGGCAT AAAGGAGCCT
  GCGTGTAGGC CTGGAGAGAT AGCACAGTTA ATACCTGTCA GCCTCCTGAC AAGAAACTCA
  TAGCTTCTGA ATTTGCTGTT ATTCCACGAG TTCTGAAAAG CTGGCAAGGC CTGATGTGTC
  CATCTCTGCT TCTGACCGAG TGTACTGATA ATGGCCATGT GTTGATGCGA GTGTGAGGCC
  Y
  GCCTGTCCCT TTCAGAATAG CCTGTTTGTT GTAGGTTATT TGATCACACT GTGAGCCCTG
  AGCTTGTGTT ATTTACCGGA ACAACTTGTT CTTAGGTGTG GTTTGGCTCA TCCTTAGCAC
  ACAGCTCTGA TCCCAGCCCT TTCTGATTGA CGCTTGTAAA CAGGACTAAA TGAGGTTAAC
  CTCGGGTCTA AAGCGGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37759628	NES09162428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27543407					SNP	C	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37759628	NES09162428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134645730 () rs orientation: forward

Symbol	Name	Function Class
Rr367743	regulatory region 367743	63 bp upstream
Rr398582	regulatory region 398582	1739 bp upstream
Tssr43946	transcription start site region 43946	4 bp upstream