rs27544015 SNP Detail

Summary

• ID
  rs27544015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAG GGACAGACAA TGGGTAGCTA
  R
  GAAGAGTTTC CTGTAAAAGA TGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762639	NES09166383	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	G		A		A	A	A		A
ss45647609	mCV24804671	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss147518570	ENSMUSSNP5026836	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A					G
ss321345462	CHEV_4_133686576	CHEVERUD	SCREENING_POP	f	SNP													A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544015					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762639	NES09166383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857972 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	within coordinates
Cpgi15028	CpG island 15028	1541 bp distal
Gm68742	predicted gene, 68742	1050 bp upstream
Rr601575	regulatory region 601575	1382 bp distal
Rr601576	regulatory region 601576	801 bp distal
Rr601577	regulatory region 601577	961 bp distal
Rr601578	regulatory region 601578	813 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1928 bp upstream
Tssr43875	transcription start site region 43875	1961 bp upstream
Tssr43876	transcription start site region 43876	1891 bp upstream
Tssr43877	transcription start site region 43877	1050 bp upstream