rs27544016 SNP Detail

Summary

• ID
  rs27544016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC AGGGGACGCT GGGAGGCACT
  R
  GGAAACCGGA GTGTTTGTTA AATGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762642	NES09166380	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	A		G	G	G	A		G
ss45657175	mCV24805075	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss147518546	ENSMUSSNP6983667	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss321345456	CHEV_4_133685761	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544016					SNP	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762642	NES09166380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857157 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	12 bp downstream
Cpgi15028	CpG island 15028	726 bp distal
Gm68742	predicted gene, 68742	235 bp upstream
Rr601575	regulatory region 601575	567 bp distal
Rr601576	regulatory region 601576	within coordinates
Rr601577	regulatory region 601577	146 bp distal
Rr601578	regulatory region 601578	within coordinates
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1113 bp upstream
Tssr39537	transcription start site region 39537	1880 bp downstream
Tssr43870	transcription start site region 43870	1873 bp upstream
Tssr43871	transcription start site region 43871	1823 bp upstream
Tssr43872	transcription start site region 43872	1796 bp upstream
Tssr43873	transcription start site region 43873	1770 bp upstream
Tssr43874	transcription start site region 43874	1755 bp upstream
Tssr43875	transcription start site region 43875	1146 bp upstream
Tssr43876	transcription start site region 43876	1076 bp upstream
Tssr43877	transcription start site region 43877	235 bp upstream