rs27544018 SNP Detail

Summary

• ID
  rs27544018
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133856355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCGTGG CCTGGAGCCG
  GGAGGACCCC TGTCCTCTGC AGCTACTTGG CTCCCCCACT TCCCCCTCAG CCCCATGCTG
  GGGACCGGCT AAAAGGCAGA AAAAGCTGGG AAGGCAGGCG GACCGGTTCA GTTAAAAGCT
  TTCCCCAGTC TACCCGGGTT GTGTACATTC AGTGGCCAAA GCAGTGCCAC CCAGGTCTCC
  M
  GGTCTCTTAA TAGCACAGCT CAGTATGGAA CTTTGGAAGG CGGGTCAGTT CGCAAGCTTA
  GACAGCAAGG GCCGGGGGGA AAGCTGTGGT GGGGCGCTGG AGGGCGGGGA GGGCCAGTGC
  AGCCAGGACA TTTTCTCTAA AGCACCTCTC CACTCAAACA GGCTCAGACA AGAAAGGGGT
  GGTGGCTGTA AGCGAGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37762644	NES09166378	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27544018					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762644	NES09166378	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133856355 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	814 bp downstream
Cpgi15028	CpG island 15028	within coordinates
Gm68742	predicted gene, 68742	within coordinates
Rr601575	regulatory region 601575	within coordinates
Rr601576	regulatory region 601576	557 bp proximal
Rr601577	regulatory region 601577	635 bp proximal
Rr601578	regulatory region 601578	783 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	311 bp upstream
Tssr39535	transcription start site region 39535	1439 bp downstream
Tssr39536	transcription start site region 39536	1329 bp downstream
Tssr39537	transcription start site region 39537	1078 bp downstream
Tssr43866	transcription start site region 43866	1358 bp upstream
Tssr43867	transcription start site region 43867	1324 bp upstream
Tssr43868	transcription start site region 43868	1253 bp upstream
Tssr43869	transcription start site region 43869	1233 bp upstream
Tssr43870	transcription start site region 43870	1071 bp upstream
Tssr43871	transcription start site region 43871	1021 bp upstream
Tssr43872	transcription start site region 43872	994 bp upstream
Tssr43873	transcription start site region 43873	968 bp upstream
Tssr43874	transcription start site region 43874	953 bp upstream
Tssr43875	transcription start site region 43875	344 bp upstream
Tssr43876	transcription start site region 43876	274 bp upstream
Tssr43877	transcription start site region 43877	560 bp downstream