rs27544019 SNP Detail

Summary

• ID
  rs27544019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133856286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA AGGCAGGCGG ACCGGTTCAG
  Y
  TAAAAGCTTT CCCCAGTCTA CCCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762645	NES09166377	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T		C	C	C	T		C
ss321345451	CHEV_4_133684890	CHEVERUD	SCREENING_POP	f	SNP								C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544019					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762645	NES09166377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133856286 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	883 bp downstream
Cpgi15028	CpG island 15028	within coordinates
Gm68742	predicted gene, 68742	within coordinates
Rr601575	regulatory region 601575	within coordinates
Rr601576	regulatory region 601576	626 bp proximal
Rr601577	regulatory region 601577	704 bp proximal
Rr601578	regulatory region 601578	852 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	242 bp upstream
Tssr39535	transcription start site region 39535	1370 bp downstream
Tssr39536	transcription start site region 39536	1260 bp downstream
Tssr39537	transcription start site region 39537	1009 bp downstream
Tssr43866	transcription start site region 43866	1289 bp upstream
Tssr43867	transcription start site region 43867	1255 bp upstream
Tssr43868	transcription start site region 43868	1184 bp upstream
Tssr43869	transcription start site region 43869	1164 bp upstream
Tssr43870	transcription start site region 43870	1002 bp upstream
Tssr43871	transcription start site region 43871	952 bp upstream
Tssr43872	transcription start site region 43872	925 bp upstream
Tssr43873	transcription start site region 43873	899 bp upstream
Tssr43874	transcription start site region 43874	884 bp upstream
Tssr43875	transcription start site region 43875	275 bp upstream
Tssr43876	transcription start site region 43876	205 bp upstream
Tssr43877	transcription start site region 43877	629 bp downstream