rs27544020 SNP Detail

Summary

• ID
  rs27544020
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133856103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC GCCCGCGAGT CACTGCTCTC
  S
  GGACCAATGA GCTGCGCAGG CGGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762646	NES09166376	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	C	C	G	G	C	C	G		G	C	G	G		G
ss147518526	ENSMUSSNP257876	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							C
ss321345450	CHEV_4_133684707	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27544020					SNP	G	G	G	G	C	C	G	G	C	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762646	NES09166376	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133856103 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	1066 bp downstream
Cpgi15028	CpG island 15028	within coordinates
Gm68742	predicted gene, 68742	151 bp downstream
Rr601575	regulatory region 601575	within coordinates
Rr601576	regulatory region 601576	809 bp proximal
Rr601577	regulatory region 601577	887 bp proximal
Rr601578	regulatory region 601578	1035 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	59 bp upstream
Tssr39535	transcription start site region 39535	1187 bp downstream
Tssr39536	transcription start site region 39536	1077 bp downstream
Tssr39537	transcription start site region 39537	826 bp downstream
Tssr43866	transcription start site region 43866	1106 bp upstream
Tssr43867	transcription start site region 43867	1072 bp upstream
Tssr43868	transcription start site region 43868	1001 bp upstream
Tssr43869	transcription start site region 43869	981 bp upstream
Tssr43870	transcription start site region 43870	819 bp upstream
Tssr43871	transcription start site region 43871	769 bp upstream
Tssr43872	transcription start site region 43872	742 bp upstream
Tssr43873	transcription start site region 43873	716 bp upstream
Tssr43874	transcription start site region 43874	701 bp upstream
Tssr43875	transcription start site region 43875	92 bp upstream
Tssr43876	transcription start site region 43876	22 bp upstream
Tssr43877	transcription start site region 43877	812 bp downstream