rs27544021 SNP Detail

Summary

• ID
  rs27544021
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133855614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGATGGG AAGGGTCCAA GGATAGACAG GTAAACTACT
  AGAGTTTCAG AAAGAAGACG GGCAAGTTCT GTGCATGACA GGGAAGCTAG ACTCGGCGAG
  K
  GGCAGGCCCT CTCTACAAGA CACATCTCCT CCTCCACAGC CGCACAGTGG AGAGGAAGCG
  GGATTAAAGC GGTCGGGGGT TGGTGCAAGA GAATGGATGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762647	NES09166375	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544021					SNP	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762647	NES09166375	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133855614 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	1555 bp downstream
Cpgi15028	CpG island 15028	within coordinates
Gm68742	predicted gene, 68742	640 bp downstream
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	within coordinates
Tssr39535	transcription start site region 39535	698 bp downstream
Tssr39536	transcription start site region 39536	588 bp downstream
Tssr39537	transcription start site region 39537	337 bp downstream
Tssr43866	transcription start site region 43866	617 bp upstream
Tssr43867	transcription start site region 43867	583 bp upstream
Tssr43868	transcription start site region 43868	512 bp upstream
Tssr43869	transcription start site region 43869	492 bp upstream
Tssr43870	transcription start site region 43870	330 bp upstream
Tssr43871	transcription start site region 43871	280 bp upstream
Tssr43872	transcription start site region 43872	253 bp upstream
Tssr43873	transcription start site region 43873	227 bp upstream
Tssr43874	transcription start site region 43874	212 bp upstream
Tssr43875	transcription start site region 43875	377 bp downstream
Tssr43876	transcription start site region 43876	404 bp downstream
Tssr43877	transcription start site region 43877	1301 bp downstream
Ubxn11	UBX domain protein 11	1519 bp downstream