rs27544022 SNP Detail

Summary

• ID
  rs27544022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133855563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGCGGGT CACCTCACTC
  TGCTGGGACT TGATCTAGGG GCGGAGGATT GACAGGGTTG GCAGGCAAGC TGAAGGATTT
  GTGGGAGGAA TTCCTTCGGG TGTGAGCAAC AGCTTCTATC CTGCCCACTC TGAGGGGAGG
  TTCTGGCCAC TAAGGGATGG GAAGGGTCCA AGGATAGACA GGTAAACTAC TAGAGTTTCA
  R
  AAAGAAGACG GGCAAGTTCT GTGCATGACA GGGAAGCTAG ACTCGGCGAG GGGCAGGCCC
  TCTCTACAAG ACACATCTCC TCCTCCACAG CCGCACAGTG GAGAGGAAGC GGGATTAAAG
  CGGTCGGGGG TTGGTGCAAG AGAATGGATG GCCCTATACT GGGGGAATGA GCGTGGGCAG
  CTCACGCTGG GGATGCCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762648	NES09166374	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544022					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762648	NES09166374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133855563 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	1606 bp downstream
Cpgi15028	CpG island 15028	within coordinates
Gm68742	predicted gene, 68742	691 bp downstream
Rr601575	regulatory region 601575	477 bp proximal
Rr601576	regulatory region 601576	1349 bp proximal
Rr601577	regulatory region 601577	1427 bp proximal
Rr601578	regulatory region 601578	1575 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	within coordinates
Tssr39535	transcription start site region 39535	647 bp downstream
Tssr39536	transcription start site region 39536	537 bp downstream
Tssr39537	transcription start site region 39537	286 bp downstream
Tssr43866	transcription start site region 43866	566 bp upstream
Tssr43867	transcription start site region 43867	532 bp upstream
Tssr43868	transcription start site region 43868	461 bp upstream
Tssr43869	transcription start site region 43869	441 bp upstream
Tssr43870	transcription start site region 43870	279 bp upstream
Tssr43871	transcription start site region 43871	229 bp upstream
Tssr43872	transcription start site region 43872	202 bp upstream
Tssr43873	transcription start site region 43873	176 bp upstream
Tssr43874	transcription start site region 43874	161 bp upstream
Tssr43875	transcription start site region 43875	428 bp downstream
Tssr43876	transcription start site region 43876	455 bp downstream
Tssr43877	transcription start site region 43877	1352 bp downstream
Ubxn11	UBX domain protein 11	1468 bp downstream