rs27544023 SNP Detail

Summary

• ID
  rs27544023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCCTTT GGCAGAGCTC
  TGGCTGATGG AAGCAACAGA AATGCTCATC AGACAGGGCC AGGCAGAGAG GATGCCCCAA
  GGTGTGGCTG GGGACAGCCA TCGTCAGGGC TTAAGACAAT CTTTTGAGAC TAGTTGGTGA
  ATAAGGAATG TTGCCTCTGG AGGAAGAGGA GGCGGCTGCG GAAAGGGTCT GGGTCTGGGT
  Y
  TGCAGATTAG GACGACAAGG AGTTGGTTAC AAGGCCTGGT GAAGAGCTAG CTGGATAGGA
  TCGGTGGCCA TCCTGACTCA GGCCAGCTTC AGGAACTCCT GCAGTGTGTC CTGCTCCACG
  GCCTCCACGA AGAGTTCATA GTCCTGAGGA AGGGAGGCAG TCACCTGAGT CGAGGTGCAG
  GGCACCCCAG TTGTTTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762649	NES09166373	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27544023					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762649	NES09166373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	589 bp proximal
Gm68742	predicted gene, 68742	1280 bp downstream
Rr601575	regulatory region 601575	1066 bp proximal
Rr601576	regulatory region 601576	1938 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	within coordinates
Tssr39535	transcription start site region 39535	58 bp downstream
Tssr39536	transcription start site region 39536	within coordinates
Tssr39537	transcription start site region 39537	245 bp upstream
Tssr43866	transcription start site region 43866	within coordinates
Tssr43867	transcription start site region 43867	24 bp downstream
Tssr43868	transcription start site region 43868	60 bp downstream
Tssr43869	transcription start site region 43869	135 bp downstream
Tssr43870	transcription start site region 43870	288 bp downstream
Tssr43871	transcription start site region 43871	336 bp downstream
Tssr43872	transcription start site region 43872	366 bp downstream
Tssr43873	transcription start site region 43873	389 bp downstream
Tssr43874	transcription start site region 43874	419 bp downstream
Tssr43875	transcription start site region 43875	1017 bp downstream
Tssr43876	transcription start site region 43876	1044 bp downstream
Tssr43877	transcription start site region 43877	1941 bp downstream
Ubxn11	UBX domain protein 11	879 bp downstream